Researcher Shawn Thomas

Shawn Thomas

#IAmScience Shawn Thomas

March 5, 2021 By Lauren Hines in #IAmScience Tags: bioinformatics, Brassicales

By Lauren Hines | Bond LSC

Social media botany advocate and self-proclaimed coffee snob, Shawn Thomas is the kind of person to find joy in everything.

Thomas graduated from the University of Georgia in spring 2018 and worked as a bioinformatics technician for a year with Jim Leebens-Mack before joining Chris Pires’ lab at Bond Life Sciences Center as a Ph.D. student in fall 2019. Ever since, he’s been studying how genome duplications affect plant traits in a certain group of plants that include broccoli, cauliflower and kale.

Genome duplications occur when DNA is copied multiple times in a plant when two species hybridize and come together. To study this, Thomas is looking at their wild distant relatives.

“Understanding these ancient genome duplications, how they happened and when they happened can give us an idea of how different evolutionary innovations occur,” Thomas said.

Thomas has been a part of the Pires lab for over a year now and has brought his own set of skills.

“The thing that I’ve been really impressed with him — well, two things — one is he’s very skilled with bioinformatics,” said Pires, Bond LSC principal investigator. “He doesn’t have a computer science degree, but he’s got math skills and coding and a couple of different computer languages for data wrangling genomes. But the other thing is he’s made some really hilarious YouTube videos.”

Mixing his love of plant biology and lab inside jokes, Thomas makes clever YouTube videos for fun and even for grants.

One video includes what it’s really like inside the Pires lab, despite Pires’ expectations. It involves a well-known lab joke about Thomas prioritizing his undergraduate work while putting aside his Ph.D. thesis.

Another video acted as a submission for the PACBIO 2020 Plant and Animal Sciences SMRT grant program. The video was about the need for a reference genome of Cakile — “Sea Rocket” — to enable new studies in polypoid evolution, plant migration and crop improvement. In Europe, arugula is known as “rocket,” and a closely related species to rocket is “Sea Rocket,” so Thomas didn’t miss the opportunity to have some fun with it.

Even outside of YouTube, Thomas is tech-savvy on many fronts.

“I like to play with computers, and I like genetics, so playing around with big data genomic data has been fun,” Thomas said. “The work that I do is more basic research, where we are trying to understand the fundamental concepts behind how plants work and how these different mechanisms work. For me, the curiosity of trying to understand how polyploidy works is what interests me.”

Thomas is active on Twitter talking about everything Brassica — the mustard family — to help get others engaged in the basic research of plant biology.

“When we go to a conference, I’m known for being too much of the Twitter guy, but he’s also in there tweeting all the talks,” Pires said. “So, he’s not afraid to be an advocate for botany. He clearly loves botany, and he wants to have an influence, not just a science influence but an educational outreach kind of influence.”

In the lab, Thomas often helps move things forward by reminding the group about journal clubs, reading papers and corralling the undergraduates through his love of coffee.

“I’m a bit of a coffee snob, so I like to experiment with coffee and try all the new different recipes and techniques,” Thomas said.

Before the pandemic, Thomas would regularly visit Shortwave Coffee and get a pour-over of Ethiopian coffee (he highly recommends it). Now, he makes his own each morning and talks with the undergraduates about coffee while distanced in the lab.

“He’s a good team player, and he’s very social,” Pires said.

While Thomas is still learning how to be a mentor and exploring the diversity of plants, he has even more ahead of him.

“I’m proud of what I’ve done so far,” Thomas said. “I definitely have a long way to go, but I find enjoyment out of being able to create a nice figure or graph or get a good result that works with the story that we’re trying to tell.”

The start of an academic relationship

January 30, 2019 By Danielle Pycior in Events and speakers Tags: Graduate Life Sciences Joint Recruitment Weekend

Joint recruitment weekend welcomes prospective grad students to MU family

By Danielle Pycior | Bond LSC

As laughter and conversation began to fill the hall with the arrival of graduate students from across the country, new relationships began to form.

Entering its 10th year, the annual Graduate Life Sciences Joint Recruitment Weekend continues a unique recruitment tradition at the University of Missouri that has only grown with time.

Chris Pires, a Bond Life Sciences Center investigator, professor of biological sciences and associate dean for research in MU’s College of Arts and Science, has utilized the event every year as an opportunity to bring students together who wouldn’t otherwise meet. Though Pires plays a large role in recruitment, he acknowledges that giving students an opportunity to build relationships is crucial.

“They usually close the deal with each other and with the current students, I’m just throwing a party,” Pires said.

The weekend is a shared event between many programs across MU’s campus — biochemistry, biological sciences, the genetics area program, the informatics institute, molecular pathogenesis and therapeutics, plant sciences, the interdisciplinary plant group and the life sciences fellow-ship program —that come together to meet with students looking for research opportunities.

“It’s the largest group we’ve had to date, so that’s pretty exciting,” said Debbie Allen, MU coordinator of graduate initiatives.

Allen has organized this event since it began and says it’s important to show graduate students that MU is a community and not just a compilation of labs and offices.

“The most rewarding thing is when I see connections that start to be made, when I see the synergy between MU faculty and grad students and postdocs with the prospective students visiting our campus,” Allen said.

Pires is currently recruiting two students to join his research team. Both agreed that the weekend was greater than their expectations.

Michael Pisias from Sacramento State University said he hadn’t even thought about attending MU until he began speaking with Pires. After meeting, seeing the facilities and getting to know more of the MU community, Pisias said he could see a future here for himself.

Pires&Pisias — Michael Pisias is interested in research on polyploidy, or multiple chromosome duplications in plant species, and how that affects evolution and speciation. He plans to attend MU in pursuit of his PhD.

“It’s a really nice community, I love that everyone is super friendly,” Pisias said. “Every single person I have interacted with has been nice and more than helpful, and this facility is amazing.”

Pires said the recruitment weekend is to show students what this campus is all about.

“Being a grad student isn’t just being a member of your department, but part of this larger community of graduate students across MU,” Pires said.

Shawn Thomas from the University of Georgia was roped in by Pires at a UGA conference. Thomas said they talked for hours about his research and Pires convinced him to come look at MU.

“Coming to this recruitment weekend was amazing. It was a lot more than I expected. All the collaboration and the openness with faculty and students seem really great. I think this would be a cool place to start my graduate studies,” Thomas said.

Though this weekend may not be all that it takes to convince a student to attend the university, it does show them what MU is all about.

“The present and future of science is teamwork,” Pires said, “These collaborative events really start the spirit of, ‘hey we’re going to work together.’”