Life Sciences Week

By Jinghong Chen | Bond Life Sciences Center

“Living things are too beautiful for there not to be a mathematics that describes them.”

This is Thomas Schneider’s motto.

Schneider, a research biologist at the National Cancer Institute, spent most of his career understanding math and its relation with fundamental biology. His lab focuses on the DNA and RNA patterns that characterize genetic control systems; they invented the widely-used sequence logos.

“In the first place, I am doing this because I am curious,” Schneider said. “Let’s go find the math and who knows what would come out of that.”

Schneider will speak during the 33rd annual Missouri Life Sciences Week, a celebration of MU’s science research and collaboration across disciplines.

Claude Shannon’s information theory lays the foundation of Schneider’s study. In the landmark paper published in 1948, Shannon defined the quantity of information and how it transmits amid interference of noise. When people communicate via a phone call, the heat of the telephone line is one type of noise. As noise contaminates information, the highest rate at which information can be reliably transmitted over a noisy communication channel is defined as the channel capacity.

A similar concept emerges in Schneider’s Molecular Information Theory. It leads to a theoretical measure of the efficiency of molecules.

“I thought [Shannon’s] theory was screaming as I dragged it into biology. The stunning thing is that it fits biology really, really well,” Schneider said.

He looked at the DNA binding protein EcoRI, a restriction enzyme that binds DNA. When it binds, there is an inequality relationship between information and the information gained for the dissipated energy. The efficiency of DNA binding sites on nucleic acids is about 70 percent.

This mysterious number has appeared widely in his research and it also describes ecological evenness. In an even ecosystem with all species being equally represented, the evenness is close to 100 percent, but when only one species dominates the environment, its evenness dwindles to 0 percent.

Schneider found that fish species diversity in a Georgia estuary is near 70 percent and the evenness of plant species in different divisions of 8-square-meter plots in California is also around 70 percent.

When Schneider turns from ecological system to biological systems, this number still stands out. Caenorhabditis elegans (C. elegans), a free-living tiny worm, has been extensively studied and has had its entire cell lineage traced. On the basis of previous studies, Schneider calculated the efficiency of its lineage and found that the number fits the ubiquitous 70 percent, when excluding the dead cells of a C. elegans.

With this established case, one of his colleagues suggested looking into one of human’s biggest enemy – cancer. Cancer occurs when a cell develops mutations and grows out of control. Schneider hypothesized that if you have more of a certain type of cell, then you have a larger chance for that cell type to get a mutation that might lead to cancer.

The International Agency for Research on Cancer (IARC) publishes a report on all different types of cancers observed each five or six years. Based on the data collected by IARC and the hypothesis, Schneider found that for adults whose ages are above 14 years old, the cancer type evenness always remains around 70 percent.

“The thing that is interesting is that when you understand things fundamentally, it inevitably leads to practical results,” Schneider said.

Schneider’s speech on “Three Principles of Biological States: Ecology and Cancer” will be held at 1:15 p.m. April 11 in the Monsanto Auditorium at Bond Life Sciences Center.

Missouri Life Sciences Week is a university-wide event that brings together research across scientific disciplines at Mizzou. This year will highlight more than 300 student, faculty and staff research presentations and four topical lectures by accomplished researchers in addition to career development workshops and scientific service and supply exhibits.

Check out the full schedule of events here.

By Jinghong Chen | Bond Life Sciences Center

People often think of metabolism as a perfect network. But that assumption is simply not accurate.

Andrew Hanson, an eminent scholar and professor at the University of Florida, describes the misunderstanding as “the power of a paradigm.” American biochemist Albert Lehninger spread the misunderstanding in his classic textbook “Biochemistry”, in which the message he communicated to generations of students was: metabolism is a beautiful machine that functions flawlessly.

Hanson challenges this “metabolism is perfect” paradigm using illustrations from different kinds of organisms in his lecture. He will speak in Bond LSC’s Monsanto Auditorium at 1 p.m. Friday April 14, during the 33rd annual Missouri Life Sciences Week.

For every living organism, metabolism is the sum of every chemical reaction that occurs to maintain life. This sum contains all the metabolites — small molecules created at each level of cell processes and final products — that share a part in the growth, development, reproduction and running of cells and whole organisms.

However, enzymes can make mistakes; many chemical compounds in cells are unstable and undergo spontaneous reactions. The consequences of enzyme errors and chemical side-reactions are, at best, unwanted and sometimes toxic, so organisms have developed mechanisms – damage-control systems – to deal with the consequences of damage.

Hanson’s lab has studied metabolite damage and the damage-control systems that plants and microorganisms employ to cope. But the impact of metabolic problems also reaches into the human domain, causing disease from failure or mutation of damage repair enzymes. “It matters in aging humans and animals a great deal, because aging is the result of cumulative damage,” Hanson said.

Plants are also afflicted by metabolite damage. Under environmental stress such as high temperature or water loss, the error rate of enzymes and rates of unwanted chemical reactions can go up.

The understanding of metabolite damage could also advance metabolic engineering, which is a purposeful manipulation by combining metabolic pathways and DNA techniques to produce desired products. After creating new pathways in an organism, it may fail to cope with the abnormal reactions produced by the new pathways. To fix the problem, the only solution might be to install the required damage control enzymes.

Hanson’s lab hopes to identify new or unsuspected damage reactions, and enzymes that repair or prevent damage. They also are working to connect with metabolic engineering groups that install modified pathways in plants and microbes to study sources of damage and propose solutions.

Metabolism is not perfect. However, after studying its imperfection for years, Hanson concluded, “life is put together in a very beautiful and even more powerful way than we first realize. It makes a lot of mistakes, but it also fixes them so well that we do not even notice them.”

Hanson’s lecture on “Fixing or safely trashing broken metabolites and why it matters” is this year’s Charles W. Gehrke distinguished lecture. Gehrke, a longtime MU professor of Biochemistry, was selected by NASA to analyze rocks retrieved from the first moon landing for any traces of extraterrestrial life. He died in 2009.

Hanson’s lecture is free and open to the public as part of Missouri Life Sciences Week. It occurs at 1:00 on Friday, April 14 in Bond LSC’s Monsanto Auditorium. See more about events during the week at bondlsc.missouri.edu/life-sciences-week.

Jessica Whited studies the genetics behind how salamanders grow severed limbs

By Eleanor Hasenbeck | Bond LSC

It takes about two months for an axolotl to regenerate a lost limb. Humans, as you probably know, don’t regenerate limbs.

But, a basic understanding of how the Mexican salamander regrows limbs advance regenerative medicine in humans according to Jessica Whited, a researcher at Brigham Women’s Hospital and assistant professor at Harvard Medical School.

Whited will speak at 3:30 p.m., Thursday April 13, in Monsanto Auditorium as part of Missouri Life Sciences Week at Bond Life Science Center. Her lecture, “Identifying roadblocks to regeneration in axolotl salamanders” will present the lab’s discoveries and evidence that a specific gene in axolotls can block the animal’s ability to regenerate.

Whited’s lab found axolotls can exhaust their ability to regenerate. When a limb is severed repeatedly, the salamander stops producing blastemas, the mass of cells capable of regeneration that allow the limb to grow back. This could be due to a dysregulated gene blocking the animal’s ability to produce them.

The Whited Lab sequenced the mRNA in axolotls that could regenerate limbs and that could no longer regenerate. They found 912 genes that differed between the two groups. Whited will discuss one of these genes, which her lab considers a potential inhibitor to regeneration.

“It’s much more common for people to think “Oh, what are the things that promote limb regeneration?’ than it is to think about the things that we might have to block to make it happen,” Whited said. “This project has the potential to uncover the roadblocks, which could turn out to be equally critical.”

An MU alumna, Whited received the National Institutes of Health New Innovator Award in 2015 for her work with this unique regenerative salamander. She earned a PhD in biology at the Massachusetts Institute of Technology, and two undergraduate degrees in biological sciences and philosophy at MU.

Whited attended MU as a Bright Flight and Curator’s Scholar. And though it happened nearly 20 years ago, she said receiving those two scholarships were among the most important things that happened in her career. As a high school student, she knew she would go to college, but financially, she didn’t know how it would happen. She also credits her education and undergraduate research experience at MU for preparing her to think at the research bench.

“You have to get an undergraduate education, and it totally prepared me even for graduate school at MIT, which is one of the top programs in the world, in many subjects, but in biology especially,” Whited said. “The idea that you could find a career where you’re using your brain as your primary asset, I figured that out while I was at the University of Missouri, because there were people, our professors, doing that.”

Whited’s lecture is free and open to the public as part of Missouri Life Sciences Week. It occurs at 3:30 on Thursday, April 13 in Bond LSC’s Monsanto Auditorium. See more about events during the week at bondlsc.missouri.edu/life-sciences-week.